As far as off the shelf solutions, check out MAXLOADPRO for loading trucks. It may be able to be configured to load any rectangular volume, but I haven't tried that yet. In general 3d bin-packing problems have the added complication that the objects can be rotated into different positions so for any object with a given length, width and height, you effectively have to create three variables representing each position, but you only use one in the solution.
In general, stand-alone MIP formulations (or branch and bound) don't work well for the 2d or 3d problem but constraint programming has met with some success producing exact solutions for the 2d problem. Check out this abstract. Without looking at the paper, I like the decomposition approach for the problem where you're trying to minimize the number of same-sized bins. I haven't seen as many results for the 3d problem, but let us know if you find any that are implementable.
Good luck !
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