For the Tomcat service, startup settings are stored in the registry under Options
key at:
HKEY_LOCAL_MACHINESOFTWAREApache Software FoundationProcrun 2.0Tomcat<X>ParametersJava
(substitute appropriate Tomcat version where needed).
Edit:
On 64-bit Windows, the registry key is:
HKEY_LOCAL_MACHINESOFTWAREWow6432NodeApache Software FoundationProcrun 2.0Tomcat<X>ParametersJava
even if Tomcat is running under a 64-bit JVM.
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