postgresql - Counting chars in sequences via SQL

Question

I have a database with a sequence table. Each (amino acid) sequence in this table comprises of 20 different chars (A, V, ...). For instance "MQSHAMQCASQALDLYD...".

I would like to count the number of appearance of each char, so that I get something like "2xM, 3xQ, ...".

Furthermore, I would like to do this over all sequences in my DB, so I get the overall appearance of each char. ("248xM, 71x W,...").

How can I do this in PostgreSQL? At the moment, I am doing it with Ruby, but I have 25,000 sequences with a length of about 400 chars each. This takes a while and I hope it will be faster with SQL.

Answer 1

This is How to find all A's in a string:

select length(regexp_replace('AAADDD', '[^A]', '', 'g'));

This is how to find all A's in a table:

select sum(length(regexp_replace(field, '[^A]', '', 'g'))) from table;