You are drawing your path like a stroke:
This will not allow you to use Fill
and is the reason your point looks mismatched. If you instead draw your path like a polygon, you will be able to use Fill
and your points will appear aligned.
Here's the path I would use, you can check it out using this online editor.
M 0 4
L 4 2
L 4 3.75
L 16 3.75
L 16 2
L 20 4
L 16 6
L 16 4.25
L 4 4.25
L 4 6
L 0 4
Edit
Just saw that you changed your target picture. Here's the path I would use for the new one:
M 4 2
L 0 4
L 4 6
M 0 4
L 20 4
M 16 2
L 20 4
L 16 6
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