I am trying to understand where exactly SMOTE-ing should occur when training a model with cross-validation. I understand that all pre-processing steps should occur for each fold of cross-validation. So does that mean the following two set ups are identical and theoretically correct?
SET UP 1: Use recipes to pre-process, smote within trainControl
set.seed(888, sample.kind = "Rounding")
tr_ctrl <- trainControl(summaryFunction = twoClassSummary,
verboseIter = TRUE,
savePredictions = TRUE,
sampling = "smote",
method = "repeatedCV",
number= 2,
repeats = 0,
classProbs = TRUE,
allowParallel = TRUE,
)
cw_smote_recipe <- recipe(husb_beat ~ ., data = nfhs_train) %>%
step_nzv(all_predictors()) %>%
step_naomit(all_predictors()) %>%
step_dummy(all_nominal(), -husb_beat) %>%
step_interact(~starts_with("State"):starts_with("wave"))%>%
step_interact(~starts_with("husb_drink"):starts_with("husb_legal"))
cw_logit1 <- train(cw_smote_recipe, data = nfhs_train,
method = "glm",
family = 'binomial',
metric = "ROC",
trControl = tr_ctrl)
SET UP 2: Use recipes to pre-process AND smote : DOES THIS SMOTE WITHIN EACH CV FOLD??
set.seed(888, sample.kind = "Rounding")
tr_ctrl <- trainControl(summaryFunction = twoClassSummary,
verboseIter = TRUE,
savePredictions = TRUE,
#sampling = "smote", ## NO LONGER WITHIN TRAINCONTROL
method = "repeatedCV",
number= 2,
repeats = 0,
classProbs = TRUE,
allowParallel = TRUE,
)
smote_recipe <- recipe(husb_beat ~ ., data = nfhs_train) %>%
step_nzv(all_predictors()) %>%
step_naomit(all_predictors()) %>%
step_dummy(all_nominal(), -husb_beat) %>%
step_interact(~starts_with("State"):starts_with("wave"))%>%
step_interact(~starts_with("husb_drink"):starts_with("husb_legal"))%>%
step_smote(husb_beat) ## NEW STEP TO RECIPE
cw_logit2 <- train(smote_recipe, data = nfhs_train,
method = "glm",
family = 'binomial',
metric = "ROC",
trControl = tr_ctrl)
TIA!
question from:
https://stackoverflow.com/questions/65848998/smote-within-a-recipe-versus-smote-in-traincontrol 与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…