General
Almost all known HTML parsers implements the W3C DOM API (part of the JAXP API, Java API for XML processing) and gives you a org.w3c.dom.Document back which is ready for direct use by JAXP API. The major differences are usually to be found in the features of the parser in question. Most parsers are to a certain degree forgiving and lenient with non-wellformed HTML ("tagsoup"), like JTidy, NekoHTML, TagSoup and HtmlCleaner. You usually use this kind of HTML parsers to "tidy" the HTML source (e.g. replacing the HTML-valid <br> by a XML-valid <br />), so that you can traverse it "the usual way" using the W3C DOM and JAXP API.
The only ones which jumps out are HtmlUnit and Jsoup.
HtmlUnit
HtmlUnit provides a completely own API which gives you the possibility to act like a webbrowser programmatically. I.e. enter form values, click elements, invoke JavaScript, etcetera. It's much more than alone a HTML parser. It's a real "GUI-less webbrowser" and HTML unit testing tool.
Jsoup
Jsoup also provides a completely own API. It gives you the possibility to select elements using jQuery-like CSS selectors and provides a slick API to traverse the HTML DOM tree to get the elements of interest.
Particularly the traversing of the HTML DOM tree is the major strength of Jsoup. Ones who have worked with org.w3c.dom.Document know what a hell of pain it is to traverse the DOM using the verbose NodeList and Node APIs. True, XPath makes the life easier, but still, it's another learning curve and it can end up to be still verbose.
Here's an example which uses a "plain" W3C DOM parser like JTidy in combination with XPath to extract the first paragraph of your question and the names of all answerers (I am using XPath since without it, the code needed to gather the information of interest would otherwise grow up 10 times as big, without writing utility/helper methods).
String url = "http://stackoverflow.com/questions/3152138";
Document document = new Tidy().parseDOM(new URL(url).openStream(), null);
XPath xpath = XPathFactory.newInstance().newXPath();
Node question = (Node) xpath.compile("//*[@id='question']//*[contains(@class,'post-text')]//p[1]").evaluate(document, XPathConstants.NODE);
System.out.println("Question: " + question.getFirstChild().getNodeValue());
NodeList answerers = (NodeList) xpath.compile("//*[@id='answers']//*[contains(@class,'user-details')]//a[1]").evaluate(document, XPathConstants.NODESET);
for (int i = 0; i < answerers.getLength(); i++) {
System.out.println("Answerer: " + answerers.item(i).getFirstChild().getNodeValue());
}
And here's an example how to do exactly the same with Jsoup:
String url = "http://stackoverflow.com/questions/3152138";
Document document = Jsoup.connect(url).get();
Element question = document.select("#question .post-text p").first();
System.out.println("Question: " + question.text());
Elements answerers = document.select("#answers .user-details a");
for (Element answerer : answerers) {
System.out.println("Answerer: " + answerer.text());
}
Do you see the difference? It's not only less code, but Jsoup is also relatively easy to grasp if you already have moderate experience with CSS selectors (by e.g. developing websites and/or using jQuery).
Summary
The pros and cons of each should be clear enough now. If you just want to use the standard JAXP API to traverse it, then go for the first mentioned group of parsers. There are pretty a lot of them. Which one to choose depends on the features it provides (how is HTML cleaning made easy for you? are there some listeners/interceptors and tag-specific cleaners?) and the robustness of the library (how often is it updated/maintained/fixed?). If you like to unit test the HTML, then HtmlUnit is the way to go. If you like to extract specific data from the HTML (which is more than often the real world requirement), then Jsoup is the way to go.
