Welcome to OGeek Q&A Community for programmer and developer-Open, Learning and Share
Welcome To Ask or Share your Answers For Others

Categories

0 votes
234 views
in Technique[技术] by (71.8m points)

r - Create discrete color bar with varying interval widths and no spacing between legend levels

I'd like to reproduce this color scale in ggplot2: enter image description here (Source)

In the past I have found that creating discrete color scales with labels in-between in ggplot2 can be tricky.

Can this be accomplished at all? A similar, but not completely identical question I have recently posed is this one.

Question&Answers:os

与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…
Welcome To Ask or Share your Answers For Others

1 Reply

0 votes
by (71.8m points)

Thanks to Tjebo's answer, I managed to create a function that plots a nice colorbar, to be added to plots by using cowplot, patchwork or other similar packages like in his example.

Here it is: EDIT: you can find it also on github

plot_discrete_cbar = function(
    breaks, # Vector of breaks. If +-Inf are used, triangles will be added to the sides of the color bar
    palette = "Greys", # RColorBrewer palette to use
    colors = RColorBrewer::brewer.pal(length(breaks) - 1, palette), # Alternatively, manually set colors
    direction = 1, # Flip colors? Can be 1 or -1
    spacing = "natural", # Spacing between labels. Can be "natural" or "constant"
    border_color = NA, # NA = no border color
    legend_title = NULL,
    legend_direction = "horizontal", # Can be "horizontal" or "vertical"
    font_size = 5,
    expand_size = 1, # Controls spacing around legend plot
    spacing_scaling = 1, # Multiplicative factor for label and legend title spacing
    width = 0.1, # Thickness of color bar
    triangle_size = 0.1 # Relative width of +-Inf triangles
) {
    require(ggplot2)
    if (!(spacing %in% c("natural", "constant"))) stop("spacing must be either 'natural' or 'constant'")
    if (!(direction %in% c(1, -1))) stop("direction must be either 1 or -1")
    if (!(legend_direction %in% c("horizontal", "vertical"))) stop("legend_direction must be either 'horizontal' or 'vertical'")
    breaks = as.numeric(breaks)
    new_breaks = sort(unique(breaks))
    if (any(new_breaks != breaks)) warning("Wrong order or duplicated breaks")
    breaks = new_breaks
    if (class(colors) == "function") colors = colors(length(breaks) - 1)
    if (length(colors) != length(breaks) - 1) stop("Number of colors (", length(colors), ") must be equal to number of breaks (", length(breaks), ") minus 1")
    if (!missing(colors)) warning("Ignoring RColorBrewer palette '", palette, "', since colors were passed manually")

    if (direction == -1) colors = rev(colors)

    inf_breaks = which(is.infinite(breaks))
    if (length(inf_breaks) != 0) breaks = breaks[-inf_breaks]
    plotcolors = colors

    n_breaks = length(breaks)

    labels = breaks

    if (spacing == "constant") {
        breaks = 1:n_breaks
    }

    r_breaks = range(breaks)

    cbar_df = data.frame(stringsAsFactors = FALSE,
        y = breaks,
        yend = c(breaks[-1], NA),
        color = as.character(1:n_breaks)
    )[-n_breaks,]

    xmin = 1 - width/2
    xmax = 1 + width/2

    cbar_plot = ggplot(cbar_df, aes(xmin=xmin, xmax = xmax, ymin = y, ymax = yend, fill = factor(color, levels = 1:length(colors)))) +
        geom_rect(show.legend = FALSE,
                  color=border_color)

    if (any(inf_breaks == 1)) { # Add < arrow for -Inf
        firstv = breaks[1]
        polystart = data.frame(
            x = c(xmin, xmax, 1),
            y = c(rep(firstv, 2), firstv - diff(r_breaks) * triangle_size)
        )
        plotcolors = plotcolors[-1]
        cbar_plot = cbar_plot +
            geom_polygon(data=polystart, aes(x=x, y=y),
                        show.legend = FALSE,
                        inherit.aes = FALSE,
                        fill = colors[1],
                        color=border_color)
    }
    if (any(inf_breaks > 1)) { # Add > arrow for +Inf
        lastv = breaks[n_breaks]
        polyend = data.frame(
            x = c(xmin, xmax, 1),
            y = c(rep(lastv, 2), lastv + diff(r_breaks) * triangle_size)
        )
        plotcolors = plotcolors[-length(plotcolors)]
        cbar_plot = cbar_plot +
            geom_polygon(data=polyend, aes(x=x, y=y),
                        show.legend = FALSE,
                        inherit.aes = FALSE,
                        fill = colors[length(colors)],
                        color=border_color)
    }

    if (legend_direction == "horizontal") { #horizontal legend
        mul = 1
        x = xmin
        xend = xmax
        cbar_plot = cbar_plot + coord_flip()
        angle = 0
        legend_position = xmax + 0.1 * spacing_scaling
    } else { # vertical legend
        mul = -1
        x = xmax
        xend = xmin
        angle = -90
        legend_position = xmax + 0.2 * spacing_scaling
    }

    cbar_plot = cbar_plot +
        geom_segment(data=data.frame(y = breaks, yend = breaks),
            aes(y=y, yend=yend),
            x = x - 0.05 * mul * spacing_scaling, xend = xend,
            inherit.aes = FALSE) +
        annotate(geom = 'text', x = x - 0.1 * mul * spacing_scaling, y = breaks,
                label = labels,
                size = font_size) +
        scale_x_continuous(expand = c(expand_size,expand_size)) +
        scale_fill_manual(values=plotcolors) +
        theme_void()

    if (!is.null(legend_title)) { # Add legend title
        cbar_plot = cbar_plot +
            annotate(geom = 'text', x = legend_position, y = mean(r_breaks),
                label = legend_title,
                angle = angle,
                size = font_size)
    }

    cbar_plot
}

Example usage:

plot_discrete_cbar(c(1:10))

enter image description here

plot_discrete_cbar(c(0,2,5,10,20, Inf), palette="Reds")

enter image description here

plot_discrete_cbar(c(0,2,5,10,20, Inf), colors=rainbow, legend_direction="vertical", legend_title="A title! WOW!", border_color="red")

enter image description here

plot_discrete_cbar(c(-Inf, -8, -4, -2, -1, 1, 2, 4, 8, Inf), palette="BrBG", legend_title="Precipitation bias (mm/day)")

enter image description here

plot_discrete_cbar(c(-Inf, -8, -4, -2, -1, 1, 2, 4, 8, Inf), palette="BrBG", legend_title="Precipitation bias (mm/day)", spacing="constant")

enter image description here


与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…
OGeek|极客中国-欢迎来到极客的世界,一个免费开放的程序员编程交流平台!开放,进步,分享!让技术改变生活,让极客改变未来! Welcome to OGeek Q&A Community for programmer and developer-Open, Learning and Share
Click Here to Ask a Question

...