Answer
Modify your Tuesday cron logic to execute every other week since the epoch.
Knowing that there are 604800 seconds in a week (ignoring DST changes and leap seconds, thank you), and using GNU date:
0 6 * * Tue expr `date +\%s` / 604800 \% 2 >/dev/null || /scripts/fortnightly.sh
Aside
Calendar arithmetic is frustrating.
@xahtep's answer is terrific but, as @Doppelganger noted in comments, it will fail on certain year boundaries. None of the date
utility's "week of year" specifiers can help here. Some Tuesday in early January will inevitably repeat the week parity of the final Tuesday in the preceding year: 2016-01-05 (%V), 2018-01-02 (%U), and 2019-01-01 (%W).
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