I believe the issue here is that your waiting and closing inside the same loop that's creating children. On the first iteration, the child will exec (which will destroy the child program, overwriting it with your first command) and then the parent closes all of its file descriptors and waits for the child to finish before it iterates on to creating the next child. At that point, since the parent has closed all of its pipes, any further children will have nothing to write to or read from. Since you are not checking for the success of your dup2 calls, this is going un-noticed.
If you want to keep the same loop structure, you'll need to make sure the parent only closes the file descriptors that have already been used, but leaves those that haven't alone. Then, after all children have been created, your parent can wait.
EDIT: I mixed up the parent/child in my answer, but the reasoning still holds: the process that goes on to fork again closes all of its copies of the pipes, so any process after the first fork will not have valid file descriptors to read to/write from.
pseudo code, using an array of pipes created up-front:
/* parent creates all needed pipes at the start */
for( i = 0; i < num-pipes; i++ ){
if( pipe(pipefds + i*2) < 0 ){
perror and exit
}
}
commandc = 0
while( command ){
pid = fork()
if( pid == 0 ){
/* child gets input from the previous command,
if it's not the first command */
if( not first command ){
if( dup2(pipefds[(commandc-1)*2], 0) < ){
perror and exit
}
}
/* child outputs to next command, if it's not
the last command */
if( not last command ){
if( dup2(pipefds[commandc*2+1], 1) < 0 ){
perror and exit
}
}
close all pipe-fds
execvp
perror and exit
} else if( pid < 0 ){
perror and exit
}
cmd = cmd->next
commandc++
}
/* parent closes all of its copies at the end */
for( i = 0; i < 2 * num-pipes; i++ ){
close( pipefds[i] );
}
In this code, the original parent process creates a child for each command and therefore survives the entire ordeal. The children check to see if they should get their input from the previous command and if they should send their output to the next command. Then they close all of their copies of the pipe file descriptors and then exec. The parent doesn't do anything but fork until it's created a child for each command. It then closes all of its copies of the descriptors and can go on to wait.
Creating all of the pipes you need first, and then managing them in the loop, is tricky and requires some array arithmetic. The goal, though, looks like this:
cmd0 cmd1 cmd2 cmd3 cmd4
pipe0 pipe1 pipe2 pipe3
[0,1] [2,3] [4,5] [6,7]
Realizing that, at any given time, you only need two sets of pipes (the pipe to the previous command and the pipe to the next command) will simplify your code and make it a little more robust. Ephemient gives pseudo-code for this here. His code is cleaner, because the parent and child do not have to do unnecessary looping to close un-needed file descriptors and because the parent can easily close its copies of the file descriptors immediately after the fork.
As a side note: you should always check the return values of pipe, dup2, fork, and exec.
EDIT 2: typo in pseudo code. OP: num-pipes would be the number of pipes. E.g., "ls | grep foo | sort -r" would have 2 pipes.