There are a couple ways to do this.
First, instead of going into openssl command prompt mode, just enter everything on one command line from the Windows prompt:
E:> openssl x509 -pubkey -noout -in cert.pem > pubkey.pem
If for some reason, you have to use the openssl command prompt, just enter everything up to the ">". Then OpenSSL will print out the public key info to the screen. You can then copy this and paste it into a file called pubkey.pem.
openssl> x509 -pubkey -noout -in cert.pem
Output will look something like this:
-----BEGIN PUBLIC KEY-----
MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAryQICCl6NZ5gDKrnSztO
3Hy8PEUcuyvg/ikC+VcIo2SFFSf18a3IMYldIugqqqZCs4/4uVW3sbdLs/6PfgdX
7O9D22ZiFWHPYA2k2N744MNiCD1UE+tJyllUhSblK48bn+v1oZHCM0nYQ2NqUkvS
j+hwUU3RiWl7x3D2s9wSdNt7XUtW05a/FXehsPSiJfKvHJJnGOX0BgTvkLnkAOTd
OrUZ/wK69Dzu4IvrN4vs9Nes8vbwPa/ddZEzGR0cQMt0JBkhk9kU/qwqUseP1QRJ
5I1jR4g8aYPL/ke9K35PxZWuDp3U0UPAZ3PjFAh+5T+fc7gzCs9dPzSHloruU+gl
FQIDAQAB
-----END PUBLIC KEY-----
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