Welcome to OGeek Q&A Community for programmer and developer-Open, Learning and Share
Welcome To Ask or Share your Answers For Others

Categories

0 votes
713 views
in Technique[技术] by (71.8m points)

lda - Remove empty documents from DocumentTermMatrix in R topicmodels?

I am doing topic modelling using the topicmodels package in R. I am creating a Corpus object, doing some basic preprocessing, and then creating a DocumentTermMatrix:

corpus <- Corpus(VectorSource(vec), readerControl=list(language="en")) 
corpus <- tm_map(corpus, tolower)
corpus <- tm_map(corpus, removePunctuation)
corpus <- tm_map(corpus, removeWords, stopwords("english"))
corpus <- tm_map(corpus, stripWhitespace)
corpus <- tm_map(corpus, removeNumbers)
...snip removing several custom lists of stopwords...
corpus <- tm_map(corpus, stemDocument)
dtm <- DocumentTermMatrix(corpus, control=list(minDocFreq=2, minWordLength=2))

And then performing LDA:

LDA(dtm, 30)

This final call to LDA() returns the error

  "Each row of the input matrix needs to contain at least one non-zero entry". 

I assume this means that there is at least one document that has no terms in it after preprocessing. Is there an easy way to remove documents that contain no terms from a DocumentTermMatrix?

I looked in the documentation for the topicmodels package and found the function removeSparseTerms, which removes terms that do not appear in any document, but there is no analogue for removing documents.

See Question&Answers more detail:os

与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…
Welcome To Ask or Share your Answers For Others

1 Reply

0 votes
by (71.8m points)
"Each row of the input matrix needs to contain at least one non-zero entry"

The error means that sparse matrix contain a row without entries(words). one Idea is to compute the sum of words by row

rowTotals <- apply(dtm , 1, sum) #Find the sum of words in each Document
dtm.new   <- dtm[rowTotals> 0, ]           #remove all docs without words

与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…
OGeek|极客中国-欢迎来到极客的世界,一个免费开放的程序员编程交流平台!开放,进步,分享!让技术改变生活,让极客改变未来! Welcome to OGeek Q&A Community for programmer and developer-Open, Learning and Share
Click Here to Ask a Question

...