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windows installer - Wix upgrade goes into maintenance mode and never does upgrade

I am running Wix 3.11.1 and when trying to do an upgrade the upgrade goes into maintenance mode and leaves two entries in Add/Remove programs list.

A short version of Product.wxs has the following:

 <Product Id="*"  Name="Boo" Language="1033" Version="1.1.0.0" Manufacturer="Foo"
          UpgradeCode="PUT-GUID-HERE">

    <Package InstallerVersion="200"  Compressed="yes" InstallScope="perMachine"/>

<MajorUpgrade AllowDowngrades="no" AllowSameVersionUpgrades="yes" 
              DowngradeErrorMessage="!(loc.NewerVersionInstalled)" />

Upgrade Code: 3F55CE54-8409-4918-9906-D8AD18794BFC

And the product and package code are:

1.0

Product Code FC49F622-02E6-40D9-ACD9-92BDD4AF5979

Package Code 6C49FAA1-5B11-4173-80A7-A7B3FA4313AE

1.1

Product Code 4871555F-F369-4159-9EF0-4BBDF07B6842

Package Code 3594D7C2-D5AC-4A41-A8C6-6E3D63C6ACA0

When I run the installer with logging I get the log information shown below. When the upgrade code is the same and product and package codes are different, and the version is incremented in the first three digits I thought an upgrade should occur but is isn't. Also both versions are per-machine so that should not stop the removal of previous version. The log shows maintenance mode and never performs removal of previous version. I have an upgrade table in the msi and it shows the max value of 1.1 and WIX_UPGRADE_DETECTED as the action. Does anyone know what would cause this to enter maintenance mode rather do a major upgrade?

Log File

    MSI (s) (68:9C) [15:04:38:423]: Doing action: RemoveExistingProducts
Action 15:04:38: RemoveExistingProducts. Removing applications
Action start 15:04:38: RemoveExistingProducts.
RemoveExistingProducts: Application: {FC49F622-02E6-40D9-ACD9-92BDD4AF5979}, Command line: UPGRADINGPRODUCTCODE={4871555F-F369-4159-9EF0-4BBDF07B6842} CLIENTPROCESSID=8344 CLIENTUILEVEL=0 MSICLIENTUSESEXTERNALUI=1 REMOVE=ALL
MSI (s) (68:BC) [15:04:38:423]: Resetting cached policy values
MSI (s) (68:BC) [15:04:38:423]: Machine policy value 'Debug' is 0
MSI (s) (68:BC) [15:04:38:423]: ******* RunEngine:
           ******* Product: {FC49F622-02E6-40D9-ACD9-92BDD4AF5979}
           ******* Action: 
           ******* CommandLine: **********
MSI (s) (68:BC) [15:04:38:423]: Note: 1: 2203 2: C:WINDOWSInstallerinprogressinstallinfo.ipi 3: -2147287038 
MSI (s) (68:BC) [15:04:38:423]: Machine policy value 'LimitSystemRestoreCheckpointing' is 0
MSI (s) (68:BC) [15:04:38:423]: Note: 1: 1717 2: Boo 
MSI (s) (68:BC) [15:04:38:423]: Calling SRSetRestorePoint API. dwRestorePtType: 1, dwEventType: 102, llSequenceNumber: 0, szDescription: "Removed Boo".
MSI (s) (68:BC) [15:04:38:439]: The call to SRSetRestorePoint API succeeded. Returned status: 0, llSequenceNumber: 45.
MSI (s) (68:BC) [15:04:38:439]: End dialog not enabled
MSI (s) (68:BC) [15:04:38:439]: Original package ==> C:WINDOWSInstaller1179bb4.msi
MSI (s) (68:BC) [15:04:38:439]: Package we're running from ==> C:WINDOWSInstaller1179bb4.msi
MSI (s) (68:BC) [15:04:38:439]: APPCOMPAT: Uninstall Flags override found.
MSI (s) (68:BC) [15:04:38:439]: APPCOMPAT: Uninstall VersionNT override found.
MSI (s) (68:BC) [15:04:38:439]: APPCOMPAT: Uninstall ServicePackLevel override found.
MSI (s) (68:BC) [15:04:38:439]: APPCOMPAT: looking for appcompat database entry with ProductCode '{FC49F622-02E6-40D9-ACD9-92BDD4AF5979}'.
MSI (s) (68:BC) [15:04:38:439]: APPCOMPAT: no matching ProductCode found in database.
MSI (s) (68:BC) [15:04:38:439]: Machine policy value 'DisablePatch' is 0
MSI (s) (68:BC) [15:04:38:439]: Machine policy value 'AllowLockdownPatch' is 0
MSI (s) (68:BC) [15:04:38:439]: Machine policy value 'DisableLUAPatching' is 0
MSI (s) (68:BC) [15:04:38:439]: Machine policy value 'DisableFlyWeightPatching' is 0
MSI (s) (68:BC) [15:04:38:439]: APPCOMPAT: looking for appcompat database entry with ProductCode '{FC49F622-02E6-40D9-ACD9-92BDD4AF5979}'.
MSI (s) (68:BC) [15:04:38:439]: APPCOMPAT: no matching ProductCode found in database.
MSI (s) (68:BC) [15:04:38:439]: Transforms are not secure.
MSI (s) (68:BC) [15:04:38:439]: Command Line: UPGRADINGPRODUCTCODE={4871555F-F369-4159-9EF0-4BBDF07B6842} CLIENTPROCESSID=8344 CLIENTUILEVEL=0 MSICLIENTUSESEXTERNALUI=1 REMOVE=ALL 
MSI (s) (68:BC) [15:04:38:439]: PROPERTY CHANGE: Adding PackageCode property. Its value is '{6C49FAA1-5B11-4173-80A7-A7B3FA4313AE}'.
MSI (s) (68:BC) [15:04:38:439]: Product Code passed to Engine.Initialize:           '{FC49F622-02E6-40D9-ACD9-92BDD4AF5979}'
MSI (s) (68:BC) [15:04:38:439]: Product Code from property table before transforms: '{FC49F622-02E6-40D9-ACD9-92BDD4AF5979}'
MSI (s) (68:BC) [15:04:38:439]: Product Code from property table after transforms:  '{FC49F622-02E6-40D9-ACD9-92BDD4AF5979}'
MSI (s) (68:BC) [15:04:38:439]: Product registered: entering maintenance mode

Update:

This is indeed a bundle install. I looked at the msi being the culprit because I thought that Wix bundle would use msiexec to perform the uninstall.

In our build we use the search term "0.0.0.0" for the version in the bundle and msi then we do a replace with the correct version, and at the end of the build we revert the Bundle.wxs and Product.wxs.

When the installer is being worked on the developer must comment out the revert, in the build file, in order to work on the files. When the developer is done they need to set the version back to "0.0.0.0". In one of the installer checkins someone had to forgotten to change back to "0.0.0.0".

I tried the msi for the two versions by themselves, and upgrade did indeed remove the entry for the original install. However the bundle upgrade still leaves second entry, even though the version is correct.

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The log shows the upgrade was successful, installing the new product and removing the old one. The most likely explanation for the two entries in Programs&Features is that there is one for the actual MSI product and another from the WiX bootstrapper. You probably need to suppress the MSI one with ARPSYSTEMCOMPONENT=1 or with WiX bootstrapper support for suppressing the MSI's entry.


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