Welcome to OGeek Q&A Community for programmer and developer-Open, Learning and Share
Welcome To Ask or Share your Answers For Others

Categories

0 votes
432 views
in Technique[技术] by (71.8m points)

r - qqnorm and qqline in ggplot2

Say have a linear model LM that I want a qq plot of the residuals. Normally I would use the R base graphics:

qqnorm(residuals(LM), ylab="Residuals")
qqline(residuals(LM))

I can figure out how to get the qqnorm part of the plot, but I can't seem to manage the qqline:

ggplot(LM, aes(sample=.resid)) +
    stat_qq()

I suspect I'm missing something pretty basic, but it seems like there ought to be an easy way of doing this.

EDIT: Many thanks for the solution below. I've modified the code (very slightly) to extract the information from the linear model so that the plot works like the convenience plot in the R base graphics package.

ggQQ <- function(LM) # argument: a linear model
{
    y <- quantile(LM$resid[!is.na(LM$resid)], c(0.25, 0.75))
    x <- qnorm(c(0.25, 0.75))
    slope <- diff(y)/diff(x)
    int <- y[1L] - slope * x[1L]
    p <- ggplot(LM, aes(sample=.resid)) +
        stat_qq(alpha = 0.5) +
        geom_abline(slope = slope, intercept = int, color="blue")

    return(p)
}
See Question&Answers more detail:os

与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…
Welcome To Ask or Share your Answers For Others

1 Reply

0 votes
by (71.8m points)

The following code will give you the plot you want. The ggplot package doesn't seem to contain code for calculating the parameters of the qqline, so I don't know if it's possible to achieve such a plot in a (comprehensible) one-liner.

qqplot.data <- function (vec) # argument: vector of numbers
{
  # following four lines from base R's qqline()
  y <- quantile(vec[!is.na(vec)], c(0.25, 0.75))
  x <- qnorm(c(0.25, 0.75))
  slope <- diff(y)/diff(x)
  int <- y[1L] - slope * x[1L]

  d <- data.frame(resids = vec)

  ggplot(d, aes(sample = resids)) + stat_qq() + geom_abline(slope = slope, intercept = int)

}

与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…
OGeek|极客中国-欢迎来到极客的世界,一个免费开放的程序员编程交流平台!开放,进步,分享!让技术改变生活,让极客改变未来! Welcome to OGeek Q&A Community for programmer and developer-Open, Learning and Share
Click Here to Ask a Question

...