So I can reproduce this, for the curious:
require(doSNOW)
registerDoSNOW(makeCluster(5, type="SOCK"))
getDoParWorkers()
getDoParName()
getDoParVersion()
fib <- function(n) {
if (n <= 1) { return(1) }
return(fib(n-1) + fib(n-2))
}
my.matrix <- matrix(runif(2500, 10, 50), nrow=50)
calcLotsaFibs <- function() {
result <- foreach(row.num=1:nrow(my.matrix), .export=c("fib", "my.matrix")) %dopar% {
return(Vectorize(fib)(my.matrix[row.num,]))
}
return(result)
}
lotsa.fibs <- calcLotsaFibs()
I have been able to get around this by putting the function in another file and loading that file in the body of the foreach. You could also obviously move the function definition into the body of the foreach itself.
[EDIT -- I had previously suggested that perhaps .export doesn't work properly with function names, but was corrected below.]
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