I am trying to install rpy2 on a machine running Windows 10. I have already installed R 3.4.4 (64bit) and it works fine in RGui. I then tried to pip install rpy2, but was getting an error that it couldn't find R, so I added c:Program FilesRR-3.4.4in to my path environment variable. Now when I do
pip install rpy2
I get a different error:
Command '('c:PROGRA~1RR-34~1.4inx64R', 'CMD', 'config', '--ldflags')' returned non-zero exit status 1
The full output is given below. Any idea what I am doing wrong?
pip install rpy2
Collecting rpy2
Downloading https://files.pythonhosted.org/packages/88/f7/788e5e1587bc1ab48b5b0467f9c3a08ef5aadbd993ed835559a10e452121/rpy2-2.9.3.tar.gz (193kB)
Complete output from command python setup.py egg_info:
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
http://www.gnu.org/licenses/.
'sh' is not recognized as an internal or external command,
operable program or batch file.
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
c:PROGRA~1RR-34~1.4inx64R CMD config --ldflags
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:UserspyAppDataLocalTemppip-build-qz4rb_4o
py2setup.py", line 374, in <module>
ri_ext = getRinterface_ext()
File "C:UserspyAppDataLocalTemppip-build-qz4rb_4o
py2setup.py", line 269, in getRinterface_ext
ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
File "C:UserspyAppDataLocalTemppip-build-qz4rb_4o
py2setup.py", line 222, in cmd_config
universal_newlines = True)
File "c:userspyminiconda3libsubprocess.py", line 626, in check_output
**kwargs).stdout
File "c:userspyminiconda3libsubprocess.py", line 708, in run
output=stdout, stderr=stderr)
subprocess.CalledProcessError: Command '('c:\PROGRA~1\R\R-34~1.4\bin\x64\R', 'CMD', 'config', '--ldflags')' returned non-zero exit status 1
----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in C:UserspyAppDataLocalTemppip-build-qz4rb_4o
py2
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