I have a list of citations in a csv file that I would like to use to fill out the XML based query form at CrossRef
CrossRef provides an XML template (below, with unused fields removed), and I would like to parse the columns of the csv file to fill out repeated fields within the query tag :
<?xml version = "1.0" encoding="UTF-8"?>
<query_batch xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="2.0" xmlns="http://www.crossref.org/qschema/2.0"
xsi:schemaLocation="http://www.crossref.org/qschema/2.0 http://www.crossref.org/qschema/crossref_query_input2.0.xsd">
<head>
<email_address>[email protected]</email_address>
<doi_batch_id>test</doi_batch_id>
</head>
<body>
<query enable-multiple-hits="true"
list-components="false"
expanded-results="false" key="key">
<article_title match="fuzzy"></article_title>
<author search-all-authors="false"></author>
<volume></volume>
<year></year>
<first_page></first_page>
<journal_title></journal_title>
</query>
</body>
</query_batch>
How can this be done in a shell script?
sample input:
author,year,article_title,journal_title,volume,first_page
Adler,2006,"Biomass yield and biofuel quality of switchgrass harvested in fall or spring","Agronomy Journal",98,1518
Alexopolou,2008,"Biomass yields for upland and lowland switchgrass varieties grown in the Mediterranean region","Biomass and Bioenergy",32,926
Balasko,1984,"Yield and Quality of Switchgrass Grown without Soil Amendments.","Agronomy Journal",76,204
desired output:
<?xml version = "1.0" encoding="UTF-8"?>
<query_batch xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" version="2.0" xmlns="http://www.crossref.org/qschema/2.0"
xsi:schemaLocation="http://www.crossref.org/qschema/2.0 http://www.crossref.org/qschema/crossref_query_input2.0.xsd">
<head>
<email_address>[email protected]</email_address>
<doi_batch_id>test</doi_batch_id>
</head>
<body>
<query>
<author>Adler</author >
<year>2006</year >
<article_title>Biomass yield and biofuel quality of switchgrass harvested in fall or spring</article_title >
<journal_title>Agronomy Journal</journal_title >
<volume>98</volume >
<first_page>1518</first_page >
</query>
<query>
<author>Alexopolou</author >
<year>2008</year >
<article_title>Biomass yields for upland and lowland switchgrass varieties grown in the Mediterranean region</article_title >
<journal_title>Biomass and Bioenergy</journal_title >
<volume>32</volume >
<first_page>926</first_page >
</query>
<query>
<author>Balasko</author >
<year>1984</year >
<article_title>Yield and Quality of Switchgrass Grown without Soil Amendments.</article_title >
<journal_title>Agronomy Journal</journal_title >
<volume>76</volume >
<first_page>204</first_page >
</query>
</body>
Other questions provide some help on doing this in C# and Java
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