None, Query expression compiles into Method expression.
Query Syntax and Method Syntax in LINQ (C#)
Because queries return an IEnumerable, you compose them in method
syntax by chaining the method calls together. This is what the
compiler does behind the scenes when you write queries by using query syntax
Also see: LINQ Query Expressions (C# Programming Guide)
At compile time, query expressions are converted to Standard Query Operator method calls according to the rules set forth in the C#
specification. Any query that can be expressed by using query syntax
can also be expressed by using method syntax. However, in most cases
query syntax is more readable and concise. For more information, see
C# Language Specification and Standard Query Operators Overview.
Apart from that one place where I have found something that can't be done in Query expression is to get the index along with the item. For example you can do following in method syntax:
var result = list.Select((r,i) => new { value = r, index = i});
In query expression an external variable has to be defined to achieve this purpose. Here is a similar discussion with answer from Jon Skeet
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